Welcome to COMMAND>_’s documentation!¶
COMMAND>_ is a web-based application used to download, collect and manage gene expression data from public databases.
Main features are.
- Easy installation and update using Docker Compose technology.
- Graphical User Interface (GUI) for parsing and importing gene expression data.
- Default Python scripts for easy parsing/importing of the most common microarray platforms (Affymetrix, Nimblegen, two-colors, etc.) and dedicated scripting editor for allowing flexible importing of any kind of gene expression data.
- Automatic pre-processing (downloading, trimming, mapping and counting) of bulk RNA-Seq data.
- Exporting of the collected data.
Note
Give it a try on https://command.fmach.it:4242 using:
- username:
guest
- password:
demo
Check out the Use Cases!
Contribute & Support¶
Author¶
To send me an e-mail about anything else related to COMMAND>_ write to
License¶
The project is licensed under the GPLv3 license.
How to cite¶
If you find COMMAND>_ useful for your work please cite
Moretto, M., Sonego, P., Villaseñor-Altamirano, A. B., & Engelen, K. (2019). First step toward gene expression data integration: transcriptomic data acquisition with COMMAND>_. BMC bioinformatics, 20(1), 54. ISO 690