parsing_scripts.experiment package¶
Submodules¶
parsing_scripts.experiment.kallisto_index module¶
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parsing_scripts.experiment.kallisto_index.main()¶ Create an index file for the KALLISTO software using the current BIOLOGICAL FEATURES
Biologial features for this compendium are putted into a FASTA file that is then indexed to be used for RNA-seq quantification using KALLISTO
- PARAMETERS:
- None
parsing_scripts.experiment.soft_experiment module¶
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parsing_scripts.experiment.soft_experiment.main()¶ Parse a SOFT file and extract EXPERIMENT information
Looks for accession number, experiment name, scientific paper, experiment description
- PARAMETERS:
- None